Gordan, Raluca : rechercher sur Z-Library

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1

Absence of a simple code: how transcription factors read the genome

Slattery, Matthew, Zhou, Tianyin, Yang, Lin, Dantas Machado, Ana Carolina, Gordân, Raluca, Rohs, Remo

Journal:

Trends in Biochemical Sciences

Année:

2014

Langue:

english

Fichier:

PDF, 2.19 MB

english, 2014

2

Quantitative modeling of transcription factor binding specificities using DNA shape

Zhou, Tianyin, Shen, Ning, Yang, Lin, Abe, Namiko, Horton, John, Mann, Richard S., Bussemaker, Harmen J., Gordân, Raluca, Rohs, Remo

Journal:

Proceedings of the National Academy of Sciences

Année:

2015

Langue:

english

Fichier:

PDF, 1.20 MB

english, 2015

3

Curated collection of yeast transcription factor DNA binding specificity data reveals novel structural and gene regulatory insights

Raluca Gordân, Kevin F Murphy, Rachel P McCord, Cong Zhu…

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.17 MB

english, 2011

4

Genomic Regions Flanking E-Box Binding Sites Influence DNA Binding Specificity of bHLH Transcription Factors through DNA Shape

Gordân, Raluca, Shen, Ning, Dror, Iris, Zhou, Tianyin, Horton, John, Rohs, Remo, Bulyk, Martha L.

Journal:

Année:

2013

Langue:

english

Fichier:

PDF, 2.45 MB

english, 2013

5

71 Genomic regions flanking E-box binding sites influence DNA binding specificity of bHLH transcription factors through DNA shape

Gordân, Raluca, Shen, Ning, Dror, Iris, Zhou, Tianyin, Horton, John, Rohs, Remo, Bulyk, Martha L.

Journal:

Journal of Biomolecular Structure and Dynamics

Année:

2013

Langue:

english

Fichier:

PDF, 140 KB

english, 2013

6

Protein−DNA binding in the absence of specific base-pair recognition

Afek, Ariel, Schipper, Joshua L., Horton, John, Gordân, Raluca, Lukatsky, David B.

Journal:

Proceedings of the National Academy of Sciences

Année:

2014

Langue:

english

Fichier:

PDF, 1.22 MB

english, 2014

7

Human-Chimpanzee Differences in a FZD8 Enhancer Alter Cell-Cycle Dynamics in the Developing Neocortex

Boyd, J. Lomax, Skove, Stephanie L., Rouanet, Jeremy P., Pilaz, Louis-Jan, Bepler, Tristan, Gordân, Raluca, Wray, Gregory A., Silver, Debra L.

Journal:

Current Biology

Année:

2015

Langue:

english

Fichier:

PDF, 1.86 MB

english, 2015

8

Sequence specificity incompletely defines the genome-wide occupancy of Myc

Guo, Jiannan, Li, Tiandao, Schipper, Joshua, Nilson, Kyle A, Fordjour, Francis K, Cooper, Jeffrey J, Gordân, Raluca, Price, David H

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 2.93 MB

english, 2014

9

A Nucleosome-Guided Map of Transcription Factor Binding Sites in Yeast

Narlikar, Leelavati, Gordân, Raluca, Hartemink, Alexander J.

Journal:

PLoS Computational Biology

Année:

2007

Langue:

english

Fichier:

PDF, 671 KB

english, 2007

10

15 TFBSshape: a motif database for DNA shape features of transcription factor binding sites

Yang, Lin, Dror, Iris, Zhou, Tianyin, Mathelier, Anthony, Wasserman, Wyeth W., Gordân, Raluca, Rohs, Remo

Journal:

Journal of Biomolecular Structure and Dynamics

Année:

2015

Langue:

english

Fichier:

PDF, 412 KB

english, 2015

11

14 Quantitative modeling of transcription factor binding specificities using DNA shape

Zhou, Tianyin, Shen, Ning, Yang, Lin, Abe, Namiko, Horton, John, Mann, Richard S., Bussemaker, Harmen J., Gordân, Raluca, Rohs, Remo

Journal:

Journal of Biomolecular Structure and Dynamics

Année:

2015

Langue:

english

Fichier:

PDF, 422 KB

english, 2015

12

Protein-DNA Binding in the Absence of Consensus Binding Motif

Afek, Ariel, Schipper, Joshua L., Gordân, Raluca, Lukatsky, David B.

Journal:

Biophysical Journal

Année:

2015

Langue:

english

Fichier:

PDF, 42 KB

english, 2015

13

HDAC inhibitors cause site-specific chromatin remodeling at PU.1-bound enhancers in K562 cells

Frank, Christopher L., Manandhar, Dinesh, Gordân, Raluca, Crawford, Gregory E.

Journal:

Epigenetics & Chromatin

Année:

2016

Langue:

english

Fichier:

PDF, 3.54 MB

english, 2016

14

Transcription Factor–DNA Binding Motifs in Saccharomyces cerevisiae : Tools and Resources

Schipper, Joshua L., Gordân, Raluca M.

Journal:

Cold Spring Harbor Protocols

Année:

2016

Langue:

english

Fichier:

PDF, 546 KB

english, 2016

15

Expression level is a key determinant of E2F1-mediated cell fate

Shats, Igor, Deng, Michael, Davidovich, Adam, Zhang, Carolyn, Kwon, Jungeun S, Manandhar, Dinesh, Gordân, Raluca, Yao, Guang, You, Lingchong

Journal:

Cell Death & Differentiation

Année:

2017

Langue:

english

Fichier:

PDF, 2.77 MB

english, 2017

16

[WORLD SCIENTIFIC Proceedings of the Pacific Symposium - Kohala Coast, Hawaii, USA (3 – 7 January 2012)] Biocomputing 2012 - IDENTIFICATION OF CELL CYCLE-REGULATED, PUTATIVE HYPHAL GENES IN CANDIDA ALBICANS

GORDÂN, RALUCA, PYNE, SAUMYADIPTA, BULYK, MARTHA L.

Langue:

english

Fichier:

PDF, 1.03 MB

english

17

Incomplete MyoD-induced transdifferentiation is associated with chromatin remodeling deficiencies

Manandhar, Dinesh, Song, Lingyun, Kabadi, Ami, Kwon, Jennifer B., Edsall, Lee E., Ehrlich, Melanie, Tsumagari, Koji, Gersbach, Charles A., Crawford, Gregory E., Gordân, Raluca

Journal:

Nucleic Acids Research

Année:

2017

Langue:

english

Fichier:

PDF, 5.69 MB

english, 2017

18

Divergence in DNA Specificity among Paralogous Transcription Factors Contributes to Their Differential In Vivo Binding

Shen, Ning, Zhao, Jingkang, Schipper, Joshua L., Zhang, Yuning, Bepler, Tristan, Leehr, Dan, Bradley, John, Horton, John, Lapp, Hilmar, Gordan, Raluca

Journal:

Année:

2018

Langue:

english

Fichier:

PDF, 20.33 MB

english, 2018

19

The vitamin D receptor gene as a determinant of survival in pancreatic cancer patients: Genomic analysis and experimental validation

Innocenti, Federico, Owzar, Kouros, Jiang, Chen, Etheridge, Amy S., Gordân, Raluca, Sibley, Alexander B., Mulkey, Flora, Niedzwiecki, Donna, Glubb, Dylan, Neel, Nicole, Talamonti, Mark S., Bentrem, Da

Journal:

Année:

2018

Langue:

english

Fichier:

PDF, 2.65 MB

english, 2018

20

DNA Sequence Context Controls the Binding and Processivity of the T7 DNA Primase

Afek, Ariel, Ilic, Stefan, Horton, John, Lukatsky, David B., Gordan, Raluca, Akabayov, Barak

Journal:

Année:

2018

Langue:

english

Fichier:

PDF, 7.47 MB

english, 2018

21

QBiC-Pred: quantitative predictions of transcription factor binding changes due to sequence variants

Martin, Vincentius, Zhao, Jingkang, Afek, Ariel, Mielko, Zachery, Gordân, Raluca

Journal:

Nucleic Acids Research

Année:

2019

Fichier:

PDF, 894 KB

2019

22

Unexpected implications of STAT3 acetylation revealed by genetic encoding of acetyl-lysine

Belo, Yael, Mielko, Zachery, Nudelman, Hila, Afek, Ariel, Ben-David, Oshrit, Shahar, Anat, Zarivach, Raz, Gordan, Raluca, Arbely, Eyal

Journal:

Biochimica et Biophysica Acta (BBA) - General Subjects

Année:

2019

Langue:

english

Fichier:

PDF, 1.11 MB

english, 2019

23

Widespread Increase in Transcription Factor-DNA Binding due to Mismatch Damage

Afek, Ariel, Gordan, Raluca

Journal:

Biophysical Journal

Année:

2018

Fichier:

PDF, 56 KB

2018